PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1700s0030.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 382aa    MW: 41893.4 Da    PI: 4.7335
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1700s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.6e-19118167255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +++G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  SapurV1A.1700s0030.1.p 118 QFRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 167
                             69*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-21118176IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-31118176IPR001471AP2/ERF domain
SMARTSM003805.6E-37118181IPR001471AP2/ERF domain
PROSITE profilePS5103223.67118175IPR001471AP2/ERF domain
CDDcd000189.03E-32118176No hitNo description
PRINTSPR003673.7E-11119130IPR001471AP2/ERF domain
PfamPF008471.8E-11119167IPR001471AP2/ERF domain
PRINTSPR003673.7E-11141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MCGGAIISDF IAPTTTARSS RRLTSGFEWF ERKPLDNKKL SKPVGADPED DFEADFQGFK  60
DESDVEEDYD VFVDAKPSSF SASEPTRKRA FSPGPAAVIS AGFSGLAEKS AKRKRKNQFR  120
GIRQRPWGKW AAEIRDPRKG VRVWLGTFNT AEEAARAYDA EARRIRGKKA KVNFPNEAPC  180
ASGKRPIKGN SQKRLTKANL SQNFSYTSNP ETDYNNMGFV EEKPQLNQFG MMSSFSASGD  240
SGVTPLTLSD NAPVYFNSDK GSNSFDCDMG WGEQGPNTPE ILSVLAATSE VDESVFVDAN  300
PKKLKPYSEN AVPAEEKNGK SLSDELLAFD TQLKYLQMPD LVGGWEASLD SFLDGETTQD  360
GTNALDLWSF DDFPSMVGGV Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A9e-20118175563ATERF1
2gcc_A9e-20118175563ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1462990.0EF146299.1 Populus trichocarpa clone WS0116_P10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304249.20.0hypothetical protein POPTR_0003s06930g
RefseqXP_006385529.10.0hypothetical protein POPTR_0003s06930g
RefseqXP_006385530.10.0transcription factor EREBP-like family protein
RefseqXP_006385531.10.0hypothetical protein POPTR_0003s06930g
RefseqXP_006385532.10.0hypothetical protein POPTR_0003s06930g
SwissprotQ9SSA82e-70RA212_ARATH; Ethylene-responsive transcription factor RAP2-12
TrEMBLB9GXS10.0B9GXS1_POPTR; Transcription factor EREBP-like family protein
STRINGPOPTR_0003s06930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48083252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.39e-67related to AP2 12